Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRC rs28485928 chr4:16208286 C/T 3.33E-6 525 38.98 46.8 8.22 KM Plot
KIRC rs2849225 chr11:125415936 A/G 6.86E-6 522 1.43 41.73 39.23 KM Plot
KIRC rs2854000 chr6:31377173 G/A 1.04E-5 514 38.95 45.85 1.88 KM Plot
KIRC rs2857506 chr6:50800308 C/T 2.91E-6 527 39.62 43.55 15.3 KM Plot
KIRC rs2857513 chr6:50811115 A/T 4.91E-6 518 40.5 40 15.3 KM Plot
KIRC rs28609420 chr16:78468218 T/G 1.24E-6 519 38.1 49.2 4.57 KM Plot
KIRC rs28689631 chr7:46582445 G/A 6.85E-5 517 47.58 33.75 28.7 KM Plot
KIRC rs28789524 chr19:54028610 G/A 3.14E-5 523 39.08 44.93 19.27 KM Plot
KIRC rs2882377 chr12:29425584 C/T 5.86E-8 524 40.93 39.7 6.07 KM Plot
KIRC rs28912683 chr7:7753725 A/G 3.58E-5 521 38.47 49.45 5.47 KM Plot
KIRC rs28912684 chr7:7753724 G/A 3.79E-5 521 38.1 50.27 5.47 KM Plot
KIRC rs28912704 chr7:7735070 A/AT 5.83E-5 527 38.47 48.48 5.47 KM Plot
KIRC rs28914835 chr7:7759925 A/G 4.85E-5 519 39.23 42.33 5.47 KM Plot
KIRC rs28915973 chr7:7724215 C/T 5.83E-5 527 38.47 48.48 5.47 KM Plot
KIRC rs2918173 chr9:6731768 C/T 4.46E-5 521 41 39.7 15.63 KM Plot